14-200x200

Ecological niche modelling workflow (v5) run 16 Aug 2017 07:30:14 UTC L.tolai DISTS5fold


Name:

Workflow: Ecological niche modelling workflow

Category: Ecological Niche Modelling

Status: Finished

Created at: 16 Aug 2017 08:00:50 UTC

Started at: 16 Aug 2017 08:00:54 UTC

Finished at: 16 Aug 2017 09:17:12 UTC

Outputs

Results (18)

answer help (text/plain)

no

area_statistics help ((list of depth 1))

  1. (text/plain)

    <AreaStatistics xmlns="http://openmodeller.cria.org.br/xml/2.0" CellsPredicted="252" PredictionThreshold="0.5" TotalCells="2769053" />

create_final_model_log help (text/plain)

[Info] Creating model
[Info] Computing normalization
[Info] Using chi-square probabilities
[Info] Finished creating model  
[Info] Calculating ROC curve
[Info] Generating 10000 background points

external_auc_list help ((list of depth 1))

  1. (text/plain)

    0.5

  2. (text/plain)

    0.4998000000000000220268248

  3. (text/plain)

    0.6665833333333333055037428

  4. (text/plain)

    0.4999000000000000110134124

  5. (text/plain)

    0.4998500000000000165201186

external_omission_list ((list of depth 1))

  1. (text/plain)

    100

  2. (text/plain)

    100

  3. (text/plain)

    66.66666666666665719276352

  4. (text/plain)

    100

  5. (text/plain)

    100

internal_test_model_log help (text/plain)

[Info] Calculating ROC curve
[Info] Generating 10000 background points
[Warn] No absence points - commission error won't be calculated
[Info] 
Model statistics
[Info] Accuracy:            23.08%
[Info] Omission error:      76.92% (10/13)
[Info] AUC:                  1.00

internal_test_model_statistics help (text/plain)

<Statistics xmlns="http://openmodeller.cria.org.br/xml/2.0">
<ConfusionMatrix Accuracy="23.07692307692307664979126" CommissionError="-100" FalseNegatives="0" FalsePositives="10" OmissionError="76.92307692307693400834978" Threshold="0.5" TrueNegatives="0" TruePositives="3" />
<RocCurve Auc="0.9997923076923077578825882" NumBackgroundPoints="10000" Points="0 0 0 0 0 0 0 0.07692307692307692734701163 0 0.07692307692307692734701163 0 0.07692307692307692734701163 0 0.07692307692307692734701163 0 0.1538461538461538546940233 0 0.2307692307692307820410349 0.0001000000000000000047921736 0.3076923076923077093880465 0.0002000000000000000095843472 0.3846153846153846367350582 0.0002999999999999999737189393 0.6153846153846154187760931 0.0002999999999999999737189393 0.7692307692307692734701163 0.0004000000000000000191686944 0.8461538461538461453059767 0.0004000000000000000191686944 1 1 1" /></Statistics>

mean_auc help (text/plain)

0.5332266666666666

mean_omission (text/plain)

93.33333333333333

projection_url help ((list of depth 1))

  1. (text/plain)

project_model_output_log help ((list of depth 1))

  1. (text/plain)

    [Info] Running serial projection version
    [Info] Projecting model
    [Info] Finished projecting model
    
    

serialized_final_model help (text/plain)

<SerializedModel xmlns="http://openmodeller.cria.org.br/xml/2.0">
<Sampler>
<Environment NumLayers="8">
<Map Id="/layers/en/terrestrial/climate/global/worldclim/present/bioclim/10arc-minutes/754f52e1-04da-11e1-be50-0800200c9a66" IsCategorical="0" Max="2159" Min="0" />
<Map Id="/layers/en/terrestrial/climate/global/worldclim/present/bioclim/10arc-minutes/754f52e2-04da-11e1-be50-0800200c9a66" IsCategorical="0" Max="4024" Min="0" />
<Map Id="/layers/en/terrestrial/climate/global/worldclim/present/bioclim/10arc-minutes/754f52e3-04da-11e1-be50-0800200c9a66" IsCategorical="0" Max="3999" Min="0" />
<Map Id="/layers/en/terrestrial/climate/global/worldclim/present/bioclim/10arc-minutes/bf441530-04d9-11e1-be50-0800200c9a66" IsCategorical="0" Max="211" Min="9" />
<Map Id="/layers/en/terrestrial/climate/global/worldclim/present/bioclim/10arc-minutes/cbea74a0-04d9-11e1-be50-0800200c9a66" IsCategorical="0" Max="95" Min="8" />
<Map Id="/layers/en/terrestrial/climate/global/worldclim/present/bioclim/10arc-minutes/f6e877b1-04d9-11e1-be50-0800200c9a66" IsCategorical="0" Max="375" Min="-251" />
<Map Id="/layers/en/terrestrial/climate/global/worldclim/present/bioclim/10arc-minutes/f6e877b2-04d9-11e1-be50-0800200c9a66" IsCategorical="0" Max="364" Min="-450" />
<Map Id="/layers/en/terrestrial/topography/global/worldclim/altitude/10arc-minutes/ede38a71-16cb-11e1-be50-0800200c9a66" IsCategorical="0" Max="6241" Min="-353" />
<Mask Id="wcs&gt;http://biostif.at.biovel.eu/geoserver/ows?&gt;biovel_temp:lepus_tolai_1MAX2050_20170803_131020_760" /></Environment>
<Presence Count="13" Label="Lepus tolai">
<CoordinateSystem>GEOGCS["WGS84", DATUM["WGS84", SPHEROID["WGS84", 6378137.0, 298.257223563]], PRIMEM["Greenwich", 0.0], UNIT["degree", 0.017453292519943295], AXIS["Longitude",EAST], AXIS["Latitude",NORTH]]</CoordinateSystem>
<Point Id="154" Sample="76 85 221 87 33 145 230 -8" X="52.681" Y="36.659" />
<Point Id="155" Sample="18 18 105 116 36 86 277 5" X="54.709" Y="37.44" />
<Point Id="156" Sample="37 37 128 105 34 92 272 -12" X="54.344" Y="37.005" />
<Point Id="157" Sample="45 45 142 99 34 142 262 -28" X="53.72" Y="36.879" />
<Point Id="158" Sample="0 0 52 143 34 99 277 175" X="62.983" Y="39.336" />
<Point Id="159" Sample="22 22 97 110 34 84 274 -12" X="54.368" Y="37.369" />
<Point Id="160" Sample="17 17 74 111 33 75 275 -11" X="54.323" Y="37.778" />
<Point Id="161" Sample="42 42 130 106 34 79 258 380" X="54.091" Y="36.806" />
<Point Id="162" Sample="12 12 95 124 34 100 277 323" X="55.936" Y="37.945" />
<Point Id="163" Sample="13 20 123 119 36 86 272 46" X="55.1" Y="37.38" />
<Point Id="164" Sample="19 25 139 116 36 92 268 102" X="55.039" Y="37.122" />
<Point Id="165" Sample="11 11 93 121 34 74 282 87" X="55.175" Y="37.943" />
<Point Id="166" Sample="47 47 145 102 35 141 262 120" X="53.983" Y="36.783" /></Presence></Sampler>
<Algorithm Id="ENVDIST" Version="0.5">
<Parameters>
<Parameter Id="DistanceType" Value="2" />
<Parameter Id="MaxDistance" Value="1" />
<Parameter Id="NearestPoints" Value="0" /></Parameters>
<Normalization Class="ScaleNormalizer" Max="1" Min="0" Offsets="0 0 0 -0.04455445544554455239438795 -0.09195402298850574585031836 0.4009584664536741116513952 0.5528255528255527906367206 0.05353351531695480641781515" Scales="0.0004631773969430291737481298 0.0002485089463220675688910621 0.0002500625156289072530645112 0.004950495049504950555163685 0.0114942528735632182312898 0.001597444089456868943077694 0.001228501228501228470860185 0.0001516530178950561166643929" UseLayerAsRef="1" />
<Model>
<EnvironmentalDistance Average="0.0127908219617344220964128 0.007283223734515979416737075 0.02969973262546406547746081 0.5110434120335110019794911 0.3032714412024756223118516 0.5600884738264929607609588 0.8822528822528821201842675 0.0671472900772263903146353" MaxDistance="1">
<EnvironmentalReferences>
<Reference Value="0.03520148216767021720485786 0.02112326043737574460257278 0.05526381595398850016254144 0.3861386138613861485069378 0.2873563218390804419044571 0.6325878594249201292143425 0.8353808353808354070224595 0.05232029117379435878554261" />
<Reference Value="0.008337193144974525127466336 0.00447316103379721656529977 0.02625656414103526292702639 0.5297029702970296183295318 0.3218390804597701104761143 0.5383386581469649101450159 0.8931203931203930412863201 0.0542917804064300887900707" />
<Reference Value="0.0171375636868920794286808 0.00919483101391650042844006 0.03200800200050012839225744 0.4752475247524752810512894 0.2988505747126436462579591 0.5479233226837060266589674 0.8869778869778869312412439 0.05171367910221413149995939" />
<Reference Value="0.02084298286243631281866584 0.01118290258449304054588769 0.03550887721930483242882559 0.4455445544554455516994551 0.2988505747126436462579591 0.6277955271565495154462155 0.8746928746928746001287891 0.04928723081589323623541432" />
<Reference Value="0 0 0.01300325081270317650883328 0.6633663366336632893904834 0.2988505747126436462579591 0.559105431309904199466132 0.8931203931203930412863201 0.08007279344858962699671423" />
<Reference Value="0.01018990273274664182245886 0.005467196819085486624023584 0.02425606401600400446882944 0.5 0.2988505747126436462579591 0.5351437699680511306254971 0.8894348894348893530548139 0.05171367910221413149995939" />
<Reference Value="0.007874015748031495953718206 0.004224652087475148400097513 0.01850462615653913553415144 0.5049504950495049548919724 0.2873563218390804419044571 0.5207667731629392893211161 0.8906633906633906194727501 0.05186533212010918658663172" />
<Reference Value="0.01945345067160722529742145 0.01043737574552683865236613 0.0325081270317579412720832 0.4801980198019802359432617 0.2988505747126436462579591 0.5271565495207667373378513 0.8697788697788697565016491 0.1111616621170761209924649" />
<Reference Value="0.005558128763316350084977557 0.00298210735586481104353318 0.02375593898474618811955672 0.5693069306930692574653108 0.2988505747126436462579591 0.5607028753993610337147402 0.8931203931203930412863201 0.1025174400970579324798848" />
<Reference Value="0.006021306160259379258725687 0.004970178926441351160980808 0.03075768942235559272324608 0.5445544554455444830054489 0.3218390804597701104761143 0.5383386581469649101450159 0.8869778869778869312412439 0.06050955414012738897699961" />
<Reference Value="0.008800370541917554301214466 0.006212723658051689384906879 0.03475868967241810963963999 0.5297029702970296183295318 0.3218390804597701104761143 0.5479233226837060266589674 0.8820638820638819765918015 0.06900212314225052934180127" />
<Reference Value="0.005094951366373320911229428 0.002733598409542743312011792 0.02325581395348837523973096 0.5544554455445543927893937 0.2988505747126436462579591 0.5191693290734824550725079 0.8992628992628992623536988 0.06672732787382468222503462" />
<Reference Value="0.0217693376563223711661621 0.01167992047713717514156873 0.03625906476619154827911728 0.4603960396039604163753722 0.3103448275862069061226123 0.6261980830670925701753049 0.8746928746928746001287891 0.07173187746436154865747881" /></EnvironmentalReferences></EnvironmentalDistance></Model></Algorithm>
<Statistics>
<ConfusionMatrix Accuracy="23.07692307692307664979126" CommissionError="-100" FalseNegatives="0" FalsePositives="10" OmissionError="76.92307692307693400834978" Threshold="0.5" TrueNegatives="0" TruePositives="3" />
<RocCurve Auc="0.9999269230769231020516941" NumBackgroundPoints="10000" Points="0 0 0 0 0 0 0 0.07692307692307692734701163 0 0.07692307692307692734701163 0 0.07692307692307692734701163 0 0.07692307692307692734701163 0 0.1538461538461538546940233 0 0.2307692307692307820410349 0 0.3076923076923077093880465 0.0001000000000000000047921736 0.3846153846153846367350582 0.0001000000000000000047921736 0.6153846153846154187760931 0.0001000000000000000047921736 0.7692307692307692734701163 0.0001000000000000000047921736 0.8461538461538461453059767 0.0002000000000000000095843472 1 1 1" /></Statistics></SerializedModel>

xval_create_model_log help ((list of depth 1))

  1. (text/plain)

    [Info] Creating model
    [Info] Computing normalization
    [Info] Using chi-square probabilities
    [Info] Finished creating model  
    [Info] Calculating ROC curve
    [Info] Generating 10000 background points
    
    

  2. (text/plain)

    [Info] Creating model
    [Info] Computing normalization
    [Info] Using chi-square probabilities
    [Info] Finished creating model  
    [Info] Calculating ROC curve
    [Info] Generating 10000 background points
    
    

  3. (text/plain)

    [Info] Creating model
    [Info] Computing normalization
    [Info] Using chi-square probabilities
    [Info] Finished creating model  
    [Info] Calculating ROC curve
    [Info] Generating 10000 background points
    
    

  4. (text/plain)

    [Info] Creating model
    [Info] Computing normalization
    [Info] Using chi-square probabilities
    [Info] Finished creating model  
    [Info] Calculating ROC curve
    [Info] Generating 10000 background points
    
    

  5. (text/plain)

    [Info] Creating model
    [Info] Computing normalization
    [Info] Using chi-square probabilities
    [Info] Finished creating model  
    [Info] Calculating ROC curve
    [Info] Generating 10000 background points
    
    

xval_test_model_log help ((list of depth 1))

  1. (text/plain)

    [Info] Calculating ROC curve
    [Info] Generating 10000 background points
    [Warn] No absence points - commission error won't be calculated
    [Info] 
    Model statistics
    [Info] Accuracy:             0.00%
    [Info] Omission error:     100.00% (3/3)
    [Info] AUC:                  0.50
    
    

  2. (text/plain)

    [Info] Calculating ROC curve
    [Info] Generating 10000 background points
    [Warn] No absence points - commission error won't be calculated
    [Info] 
    Model statistics
    [Info] Accuracy:             0.00%
    [Info] Omission error:     100.00% (3/3)
    [Info] AUC:                  0.50
    
    

  3. (text/plain)

    [Info] Calculating ROC curve
    [Info] Generating 10000 background points
    [Warn] No absence points - commission error won't be calculated
    [Info] 
    Model statistics
    [Info] Accuracy:            33.33%
    [Info] Omission error:      66.67% (2/3)
    [Info] AUC:                  0.67
    
    

  4. (text/plain)

    [Info] Calculating ROC curve
    [Info] Generating 10000 background points
    [Warn] No absence points - commission error won't be calculated
    [Info] 
    Model statistics
    [Info] Accuracy:             0.00%
    [Info] Omission error:     100.00% (2/2)
    [Info] AUC:                  0.50
    
    

  5. (text/plain)

    [Info] Calculating ROC curve
    [Info] Generating 10000 background points
    [Warn] No absence points - commission error won't be calculated
    [Info] 
    Model statistics
    [Info] Accuracy:             0.00%
    [Info] Omission error:     100.00% (2/2)
    [Info] AUC:                  0.50
    
    

xval_test_model_statistics help ((list of depth 1))

  1. (text/plain)

    <Statistics xmlns="http://openmodeller.cria.org.br/xml/2.0">
    <ConfusionMatrix Accuracy="0" CommissionError="-100" FalseNegatives="0" FalsePositives="3" OmissionError="100" Threshold="0.2526900000000000257038835" TrueNegatives="0" TruePositives="0" />
    <RocCurve Auc="0.5" NumBackgroundPoints="10000" Points="0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1" /></Statistics>

  2. (text/plain)

    <Statistics xmlns="http://openmodeller.cria.org.br/xml/2.0">
    <ConfusionMatrix Accuracy="0" CommissionError="-100" FalseNegatives="0" FalsePositives="3" OmissionError="100" Threshold="0.2528000000000000246913601" TrueNegatives="0" TruePositives="0" />
    <RocCurve Auc="0.4998000000000000220268248" NumBackgroundPoints="10000" Points="0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.0001000000000000000047921736 0 0.0002000000000000000095843472 0 0.0002000000000000000095843472 0 0.0004000000000000000191686944 0 0.0004000000000000000191686944 0 0.0004000000000000000191686944 0 1 1" /></Statistics>

  3. (text/plain)

    <Statistics xmlns="http://openmodeller.cria.org.br/xml/2.0">
    <ConfusionMatrix Accuracy="33.33333333333332859638176" CommissionError="-100" FalseNegatives="0" FalsePositives="2" OmissionError="66.66666666666665719276352" Threshold="0.2526599999999999957012164" TrueNegatives="0" TruePositives="1" />
    <RocCurve Auc="0.6665833333333333055037428" NumBackgroundPoints="10000" Points="0 0 0 0 0 0 0.0001000000000000000047921736 0.3333333333333333148296163 0.0001000000000000000047921736 0.3333333333333333148296163 0.0001000000000000000047921736 0.3333333333333333148296163 0.0001000000000000000047921736 0.3333333333333333148296163 0.0001000000000000000047921736 0.3333333333333333148296163 0.0001000000000000000047921736 0.3333333333333333148296163 0.0001000000000000000047921736 0.3333333333333333148296163 0.0001000000000000000047921736 0.3333333333333333148296163 0.0001000000000000000047921736 0.3333333333333333148296163 0.0001000000000000000047921736 0.3333333333333333148296163 0.0001000000000000000047921736 0.3333333333333333148296163 0.0002000000000000000095843472 0.3333333333333333148296163 1 1" /></Statistics>

  4. (text/plain)

    <Statistics xmlns="http://openmodeller.cria.org.br/xml/2.0">
    <ConfusionMatrix Accuracy="0" CommissionError="-100" FalseNegatives="0" FalsePositives="2" OmissionError="100" Threshold="0.1900100000000000122213351" TrueNegatives="0" TruePositives="0" />
    <RocCurve Auc="0.4999000000000000110134124" NumBackgroundPoints="10000" Points="0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.0001000000000000000047921736 0 0.0001000000000000000047921736 0 0.0002000000000000000095843472 0 0.0002000000000000000095843472 0 1 1" /></Statistics>

  5. (text/plain)

    <Statistics xmlns="http://openmodeller.cria.org.br/xml/2.0">
    <ConfusionMatrix Accuracy="0" CommissionError="-100" FalseNegatives="0" FalsePositives="2" OmissionError="100" Threshold="0.1919700000000000017497115" TrueNegatives="0" TruePositives="0" />
    <RocCurve Auc="0.4998500000000000165201186" NumBackgroundPoints="10000" Points="0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.0001000000000000000047921736 0 0.0002000000000000000095843472 0 0.0002000000000000000095843472 0 0.0002000000000000000095843472 0 0.0002999999999999999737189393 0 1 1" /></Statistics>

xval_threshold ((list of depth 1))

  1. (text/plain)

    0.25269

  2. (text/plain)

    0.2528

  3. (text/plain)

    0.25266

  4. (text/plain)

    0.19001

  5. (text/plain)

    0.19197

Errors/Logs (0)

None

Inputs

Data (2)

input_points help

occurrenceID,Clade,nameComplete,decimalLongitude,decimalLatitude
154,C,Lepus tolai,52.681,36.659 
155,C,Lepus tolai,54.709,37.440 
156,C,Lepus tolai,54.344,37.005
157,C,Lepus tolai,53.720,36.879 
158,C,Lepus tolai,62.983,39.336 
159,C,Lepus tolai,54.368,37.369 
160,C,Lepus tolai,54.323,37.778 
161,C,Lepus tolai,54.091,36.806 
162,C,Lepus tolai,55.936,37.945 
163,C,Lepus tolai,55.100,37.380 
164,C,Lepus tolai,55.039,37.122 
165,C,Lepus tolai,55.175,37.943 
166,C,Lepus tolai,53.983,36.783

use_biostif_layers help

yes

Parameters (0)

None

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