14-200x200

Matrix Population Model analysis v12 (v1) run 25 Jun 2015 14:34:54 UTC


Name:

Workflow: Matrix Population Model analysis v12

Category: Population Modelling

Status: Finished

Created at: 25 Jun 2015 14:35:06 UTC

Started at: 25 Jun 2015 14:35:07 UTC

Finished at: 25 Jun 2015 14:36:22 UTC

Outputs

Results (25)

cohen_cumulative_distance help (text/plain)

7.159910905911445

confidence_interval_95pc_of_lambda help (application/x-error)

This output is an error, details are below.

Processor 'OutputConfidenceInterval' - Port 'output'
Set of ErrorDocuments to follow.
ErrorDocument 1
Processor 'confidence_interval' - Port 'ci'
Set of ErrorDocuments to follow.
ErrorDocument 1
Processor 'resample_data' - Port 'x': non-positive probability



damping_ratio help (text/plain)

2.0920247472869264

eigenanalysis help (text/plain)

$lambda1
[1] 1.23759588942977

$stable.stage
                 S                  J                  V                  G 
0.1414302292203250 0.1652074169746500 0.6567147438806690 0.0228324380803789 
                 D 
0.0138151718439770 

$sensitivities
                   S                   J                  V                   G
S 0.0000000000000000 0.00000000000000000  0.000000000000000 0.00595684249064723
J 0.1413353861221950 0.16509662889669599  0.000000000000000 0.02281712664959540
V 0.0808320803899648 0.09442153409162531  0.375334320415629 0.01304949783781330
G 0.0000000000000000 2.85265996102967012 11.339586865968000 0.39425095505597302
D 0.0000000000000000 0.33985570850201102  1.350957836230370 0.00000000000000000
                    D
S 0.00000000000000000
J 0.00000000000000000
V 0.00789583024258465
G 0.23854853671675499
D 0.02841981977015150

$elasticities
                    S                    J                  V
S 0.00000000000000000 0.000000000000000000 0.0000000000000000
J 0.00661227055323012 0.001334010805197200 0.0000000000000000
V 0.03028600530832130 0.063324283770979803 0.2732222142546380
G 0.00000000000000000 0.092200046409140896 0.0824633328741380
D 0.00000000000000000 0.008238287911377941 0.0196487732868529
                    G                    D
S 0.03689827586155130 0.000000000000000000
J 0.15715034753826901 0.000000000000000000
V 0.00301248700331501 0.005489330078374780
G 0.19718984465283801 0.022397731119855900
D 0.00000000000000000 0.000532758571920686

$repro.value
                S                 J                 V                 G 
 1.00000000000000  3.83040624045713  2.19067364267264 66.18455258385320 
                D 
 7.88499096196346 

$damping.ratio
[1] 2.09202474728693

eigenanalysis_elasticity_matrix help (image/png)

eigenanalysis_sensitivity_matrix_1 help (image/png)

eigenanalysis_sensitivity_matrix_2 help (image/png)

elasticity_matrix help (text/plain)

                    S                    J                  V
S 0.00000000000000000 0.000000000000000000 0.0000000000000000
J 0.00661227055323012 0.001334010805197200 0.0000000000000000
V 0.03028600530832130 0.063324283770979803 0.2732222142546380
G 0.00000000000000000 0.092200046409140896 0.0824633328741380
D 0.00000000000000000 0.008238287911377941 0.0196487732868529
                    G                    D
S 0.03689827586155130 0.000000000000000000
J 0.15715034753826901 0.000000000000000000
V 0.00301248700331501 0.005489330078374780
G 0.19718984465283801 0.022397731119855900
D 0.00000000000000000 0.000532758571920686

elasticity_plot help (image/png)

fundamental_matrix help (text/plain)

$N
                    S                    J                   V
S  1.0000000000000000  0.00000000000000000  0.0000000000000000
J -0.5439144773829230 -0.33968916118391002 -1.1305725144498000
V -0.2656166367612580 -4.03277301290436974 -0.0692669383525889
G -0.0699658993182728 -0.15677189394073901 -0.1313107756288630
D -0.0215996455601867 -0.08474671280486901 -0.0359991608556928
                   G                   D
S   0.00000000000000   0.000000000000000
J  -8.44736755768430  -2.000746009045380
V -90.27385871832450 -10.799979173656700
G  -0.98112272485364  -0.232377407840978
D  -1.92296323061054   0.763286235260870

$var
                    S                    J                   V
S  0.0000000000000000   0.0000000000000000  0.0000000000000000
J  0.6175952238321640   0.4550778874097380  0.6204647622025270
V  0.2318613414448240 -11.6718094813557993  0.0740648471013302
G  0.2023609398228160   0.4398194027381800  0.3717322278078810
D -0.0118403234133471  -0.0518072912614872 -0.0202521066508057
                     G                    D
S     0.00000000000000    0.000000000000000
J   -57.17169269716900   -0.642975116556273
V -8046.58972156430991 -104.343407994499998
G     1.94372452607787    0.634359659316817
D    -4.71036708534516   -0.180680358322158

$cv
                  S                 J                  V                 G
S  0.00000000000000               NaN                NaN               NaN
J -1.44484528743225 -1.98591738202411 -0.696722984453109               NaN
V -1.81283759342737               NaN -3.928982309444200               NaN
G -6.42949589070799 -4.23027876439506 -4.643171666149500 -1.42099981809944
D               NaN               NaN                NaN               NaN
                  D
S               NaN
J               NaN
V               NaN
G -3.42747168541142
D               NaN

$meaneta
                    S                     J                     V 
   0.0989033409773596   -4.6139807808338897   -1.3671493892869500 
                    G                     D 
-101.6253122314730035  -12.2698163552822006 

$vareta
                  S                   J                   V                   G 
   20.5852787019862    31.4302455280530    37.6927314781807 -9654.6884712662595 
                  D 
  -61.7853105193560 

generation_time help (text/plain)

-Infinity

histogram_ci_95pc_of_lambda help (application/x-error)

This output is an error, details are below.

Processor 'plot_histogram' - Port 'output'
Set of ErrorDocuments to follow.
ErrorDocument 1
Processor 'confidence_interval' - Port 'ci'
Set of ErrorDocuments to follow.
ErrorDocument 1
Processor 'resample_data' - Port 'x': non-positive probability



ErrorDocument 2
Processor 'confidence_interval' - Port 'y'
Set of ErrorDocuments to follow.
ErrorDocument 1
Processor 'resample_data' - Port 'x': non-positive probability



keyfitz_delta help (text/plain)

0.2857470019451852

lambda (text/plain)

1.2375958894297714

long_term_logarithmic_stage_vector_plot help (image/png)

long_term_proportional_stage_vector_plot help (image/png)

net_reproductive_rate help (text/plain)

0.0

population_projection help (text/plain)

$lambda
[1] 1.23759588942977

$stable.stage
                 S                  J                  V                  G 
0.1414302292203250 0.1652074169746500 0.6567147438806690 0.0228324380803789 
                 D 
0.0138151718439770 

$stage.vectors
   0                   1            2                3                 4
S 12  91.992000000000004  63.71365920  74.734304939640  85.0689208223760
J 14 103.120400000000004  77.20054736  87.557852384132  99.7905459807033
V 23  42.193899999999999 169.37115163 252.324500839681 342.5099402500070
G 12   8.311199999999999   9.74880054  11.096911143018  13.2760413686096
D  1   0.857200000000000   3.87298924   5.454550500508   7.2951221582500
                   5                 6                 7                 8
S 101.77413313176100 123.7275082769420 151.8332906685010 187.1396931958720
J 119.08571739317701 144.6557859851300 177.4333134093540 218.6454854724320
V 440.90950504452002 555.8862510210240 693.9817600170220 862.4343522309140
G  16.13977410343620  19.8060645275895  24.4116479514573  30.1525498934578
D   9.32814213799262  11.7253555101981  14.6176543457689  18.1538006634088
                   9                 10                 11                 12
S  231.1494474832470  285.8009649251340  353.5471997088490  437.4545541693540
J  270.0361478726210  333.8650604348950  412.9944864106770  511.0045970761590
V 1069.4536501972300 1324.7988999578399 1640.3036268503099 2030.4695926186500
G   37.2816286101140   46.1188624718040   57.0642517831143   70.6152290264439
D   22.5043510797205   27.8733510847783   34.5089937574549   42.7159085307988
                  13                 14                 15                16
S  541.3363457167191  669.9227367066370  829.0741623257910 1026.047261388550
J  632.3487538327690  782.5517332232660  968.4588578799770 1198.546532880580
V 2513.1590869644401 3110.4281416426102 3849.5434684224701 4764.232643680230
G   87.3888255552618  108.1495124348800  133.8438900846010  165.643759663827
D   52.8695996573349   65.4339008923931   80.9823250469685  100.224338109093
                 17                18                19                 20
S 1269.825061582900 1571.526246945120 1944.912039520300  2407.013735174790
J 1483.307880385730 1835.730776860220 2271.889930070840  2811.679903295130
V 5896.226368733300 7297.164230479130 9030.951526693780 11176.675036252100
G  204.999510428531  253.706240480081  313.985616380745   388.587199344860
D  124.037788216793  153.508987735401  189.982287969892   235.121414463515
                  21                 22                 23                 24
S  2978.909470177700  3686.685621730410  4562.626679099630  5646.687850329010
J  3479.722464075290  4306.489610554140  5329.693480599480  6596.006530957440
V 13832.210956752200 17118.689713835502 21186.021378199101 26219.733773179800
G   480.913856213202   595.176973532433   736.588553395384   911.598952553789
D   290.985364566944   360.122331601752   445.685941258823   551.579103062772
                  25                 26                27                28
S  6988.317570277350  8648.713038555239 10703.61166961240 13246.74578320900
J  8163.190443621610 10102.730863270701 12503.09814439240 15473.78284260330
V 32449.435214169702 40159.287916104498 49700.96981347350 61509.71604007600
G  1128.191108603600  1396.244673834120  1727.98666621563  2138.54919346533
D   682.632039037015   844.822610469362  1045.54899295089  1293.96713761076
                 29                30                 31                 32
S 16394.11811710520 20289.29318515160  25109.94584099900  31075.96575403330
J 19150.29002453360 23700.32020663960  29331.41886051650  36300.44340972950
V 76124.17178931250 94210.96212708310 116595.09948804299 144297.61586609099
G  2646.65969021022  3275.49515275228   4053.73933655535   5016.89113954070
D  1601.40841159204  1981.89646809257   2452.78692254643   3035.55901320335
                  33                 34                 35                 36
S  38459.48747571900  47597.30360861880  58906.22729343090  72902.10475984850
J  44925.27954647290  55599.34129708220  68809.51624361170  85158.37445635440
V 178582.13625750900 221012.51776209101 273524.18349738000 338512.40515746601
G   6208.88385189392   7684.08913298081   9509.79712494763  11769.28583112170
D   3756.79535698783   4649.39449131146   5754.07151082854   7121.21524931241
                   37                38                39                40
S  90223.345181379307 111660.0411269670 138190.0079122280 171023.3857524020
J 105391.654177474004 130432.2779901090 161422.4510894400 199775.7619299210
V 418941.561144737003 518480.3539845330 641669.1548416560 794127.1084060880
G  14565.619766105799  18026.3511495210  22309.3380840598  27609.9451087284
D   8813.186720309061  10907.1636578407  13498.6609082868  16705.8872529052
                 41                 42                 43                 44
S 211657.8392035120  261946.8717638400  324184.3717439080  401209.2458876290
J 247241.6617721430  305985.2643049730  378686.1053299060  468660.3673404550
V 982808.4450482320 1216319.6916886200 1505312.2506663599 1862968.2537329900
G  34169.9545739421   42288.5953227117   52336.1917411464   64771.0557672508
D  20675.1373934746   25587.4650515611   31666.9415687405   39190.8767162864
                  45                  46                  47                 48
S  496534.9135117440  614509.56792049995  760514.51527367404  941209.6379543730
J  580012.1441591900  717820.64543075999  888371.88013293198 1099445.3871375101
V 2305601.8529581102 2853403.37588262977 3531360.28887738008 4370396.9776101802
G   80160.3923715758   99206.17209413961  122777.15078977001  151948.4971333180
D   48502.4679272252   60026.45493393340   74288.49388327741   91939.1346618729
                 49
S 1164837.179024020
J 1360669.091773910
V 5408785.334666650
G  188050.835457226
D  113783.495135264

$pop.sizes
 [1]      62.0000000000000     246.4747000000000     323.9071479700000
 [4]     431.1681198069790     547.9405705799450     687.2372718108870
 [7]     855.8009653208831    1062.2776663920999    1316.5258814560800
[10]    1630.4252252429301    2018.4571388744600    2498.4185585104001
[13]    3092.2598814214002    3827.1026117265201    4736.4860248997902
[16]    5861.9027037597998    7254.6945357222903    8978.3966093472500
[19]   11111.6364825000001   13751.7214006356007   17019.0772885303995
[22]   21062.7421117853992   26067.1642512541985   32260.6160325523997
[25]   39925.6062100827985   49411.7663757093032   61151.7991022338974
[28]   75681.2152866448014   93662.7609969643963  115916.6480327540048
[31]  143457.9671397189959  177542.9904486600135  219726.4751825970015
[34]  271932.5824885820039  336542.6462920850026  416503.7956701989751
[37]  515463.3854541030014  637935.3669900050154  789506.1879089709837
[40]  977089.6128356700065 1209242.0884500499815 1496553.0379912999924
[43] 1852127.8881317100022 2292185.8610500600189 2836799.7994446097873
[46] 3510811.7709278501570 4344966.2162619698793 5377312.3289570398629
[49] 6654939.6344972597435 8236125.9360570702702

$pop.changes
 [1] 3.97539838709677 1.31415982236716 1.33114728251355 1.27082811879793
 [5] 1.25421863010346 1.24527728693443 1.24126719814321 1.23934252136497
 [9] 1.23843005914907 1.23799430211447 1.23778628259780 1.23768688432456
[13] 1.23763938300274 1.23761667909997 1.23760582696617 1.23760063964712
[17] 1.23759816007930 1.23759697482419 1.23759640826026 1.23759613743657
[21] 1.23759600797983 1.23759594609805 1.23759591651785 1.23759590237818
[25] 1.23759589561926 1.23759589238842 1.23759589084404 1.23759589010581
[29] 1.23759588975292 1.23759588958424 1.23759588950361 1.23759588946507
[33] 1.23759588944664 1.23759588943784 1.23759588943363 1.23759588943161
[37] 1.23759588943065 1.23759588943019 1.23759588942997 1.23759588942987
[41] 1.23759588942982 1.23759588942979 1.23759588942978 1.23759588942978
[45] 1.23759588942977 1.23759588942977 1.23759588942977 1.23759588942977
[49] 1.23759588942977

projection_matrix help (image/png)

sensitivity_matrix help (text/plain)

                   S                   J                  V                   G
S 0.0000000000000000 0.00000000000000000  0.000000000000000 0.00595684249064723
J 0.1413353861221950 0.16509662889669599  0.000000000000000 0.02281712664959540
V 0.0808320803899648 0.09442153409162531  0.375334320415629 0.01304949783781330
G 0.0000000000000000 2.85265996102967012 11.339586865968000 0.39425095505597302
D 0.0000000000000000 0.33985570850201102  1.350957836230370 0.00000000000000000
                    D
S 0.00000000000000000
J 0.00000000000000000
V 0.00789583024258465
G 0.23854853671675499
D 0.02841981977015150

sensitivity_plot help (image/png)

short_term_stage_vector_plot help (image/png)

stable_stage_distribution help (image/png)

stage_matrix help (text/plain)

       S    J                    V      G                  D
S 0.0000 0.00 0.000000000000000000 7.6660 0.0000000000000000
J 0.0579 0.01 0.000000000000000000 8.5238 0.0000000000000000
V 0.4637 0.83 0.900900000000000034 0.2857 0.8604000000000001
G 0.0000 0.04 0.008999999999999999 0.6190 0.1162000000000000
D 0.0000 0.03 0.017999999999999999 0.0000 0.0232000000000000

survival_curve_plot help (image/png)

Errors/Logs (0)

None

Inputs

Data (1)

stageMatrixFile help (text/plain)

0.0000        0.0000        0.0000        7.6660        0.0000
0.0579        0.0100        0.0000        8.5238        0.0000
0.4637        0.8300        0.9009        0.2857        0.8604
0.0000        0.0400        0.0090        0.6190        0.1162
0.0000        0.0300        0.0180        0.0000        0.0232

Parameters (5)

iterations help (text/plain)

10000

label help (text/plain)

Gentiana pneumonanthe, Terschelling

longTermYears help (text/plain)

50

shortTermYears help (text/plain)

10

stages help (text/plain)

[S, J, V, G, D]

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BioVeL has received funding from the European Union's Seventh Framework Programme for research, technological development and demonstration under grant agreement no. 283359.

Portal version: 1.6.1-61c993b