14-200x200

Biome-BGC CARBON 1.2 (v4) run 30 Jun 2015 12:55:54 UTC


Name:

Workflow: Biome-BGC CARBON 1.2

Category: Ecosystem Modelling

Status: Finished

Created at: 30 Jun 2015 12:57:18 UTC

Started at: 30 Jun 2015 12:57:19 UTC

Finished at: 30 Jun 2015 13:08:14 UTC

Outputs

Results (4)

BBGCDB_Message help (application/x-error)

This output is an error, details are below.

Processor 'message' - Port 'out1'
Set of ErrorDocuments to follow.
ErrorDocument 1
Processor 'trimID' - Port 'prID'
Set of ErrorDocuments to follow.
ErrorDocument 1
Processor 'submit_singlerun' - Port 'responseBody': Internal error has occurred while trying to execute the REST activity
java.net.ConnectException: Connection refused
java.net.PlainSocketImpl.socketConnect(unknown file)
java.net.AbstractPlainSocketImpl.doConnect(unknown file)
java.net.AbstractPlainSocketImpl.connectToAddress(unknown file)
java.net.AbstractPlainSocketImpl.connect(unknown file)
java.net.SocksSocketImpl.connect(unknown file)
java.net.Socket.connect(unknown file)
org.apache.http.conn.scheme.PlainSocketFactory.connectSocket(PlainSocketFactory.java:117)
org.apache.http.impl.conn.DefaultClientConnectionOperator.openConnection(DefaultClientConnectionOperator.java:177)
org.apache.http.impl.conn.ManagedClientConnectionImpl.open(ManagedClientConnectionImpl.java:304)
org.apache.http.impl.client.DefaultRequestDirector.tryConnect(DefaultRequestDirector.java:610)
org.apache.http.impl.client.DefaultRequestDirector.execute(DefaultRequestDirector.java:445)
org.apache.http.impl.client.AbstractHttpClient.doExecute(AbstractHttpClient.java:863)
org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:82)
org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:57)
net.sf.taverna.t2.activities.rest.HTTPRequestHandler.performHTTPRequest(HTTPRequestHandler.java:290)
net.sf.taverna.t2.activities.rest.HTTPRequestHandler.doGET(HTTPRequestHandler.java:146)
net.sf.taverna.t2.activities.rest.HTTPRequestHandler.initiateHTTPRequest(HTTPRequestHandler.java:132)
net.sf.taverna.t2.activities.rest.RESTActivity$1.run(RESTActivity.java:264)
java.lang.Thread.run(unknown file)


BBGCDB_Project_ID help (application/x-error)

This output is an error, details are below.

Processor 'trimID' - Port 'prID'
Set of ErrorDocuments to follow.
ErrorDocument 1
Processor 'submit_singlerun' - Port 'responseBody': Internal error has occurred while trying to execute the REST activity
java.net.ConnectException: Connection refused
java.net.PlainSocketImpl.socketConnect(unknown file)
java.net.AbstractPlainSocketImpl.doConnect(unknown file)
java.net.AbstractPlainSocketImpl.connectToAddress(unknown file)
java.net.AbstractPlainSocketImpl.connect(unknown file)
java.net.SocksSocketImpl.connect(unknown file)
java.net.Socket.connect(unknown file)
org.apache.http.conn.scheme.PlainSocketFactory.connectSocket(PlainSocketFactory.java:117)
org.apache.http.impl.conn.DefaultClientConnectionOperator.openConnection(DefaultClientConnectionOperator.java:177)
org.apache.http.impl.conn.ManagedClientConnectionImpl.open(ManagedClientConnectionImpl.java:304)
org.apache.http.impl.client.DefaultRequestDirector.tryConnect(DefaultRequestDirector.java:610)
org.apache.http.impl.client.DefaultRequestDirector.execute(DefaultRequestDirector.java:445)
org.apache.http.impl.client.AbstractHttpClient.doExecute(AbstractHttpClient.java:863)
org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:82)
org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:57)
net.sf.taverna.t2.activities.rest.HTTPRequestHandler.performHTTPRequest(HTTPRequestHandler.java:290)
net.sf.taverna.t2.activities.rest.HTTPRequestHandler.doGET(HTTPRequestHandler.java:146)
net.sf.taverna.t2.activities.rest.HTTPRequestHandler.initiateHTTPRequest(HTTPRequestHandler.java:132)
net.sf.taverna.t2.activities.rest.RESTActivity$1.run(RESTActivity.java:264)
java.lang.Thread.run(unknown file)

BBGCDB_Project_URL help (application/x-error)

This output is an error, details are below.

Processor 'GetURL' - Port 'url'
Set of ErrorDocuments to follow.
ErrorDocument 1
Processor 'trimID' - Port 'prID'
Set of ErrorDocuments to follow.
ErrorDocument 1
Processor 'submit_singlerun' - Port 'responseBody': Internal error has occurred while trying to execute the REST activity
java.net.ConnectException: Connection refused
java.net.PlainSocketImpl.socketConnect(unknown file)
java.net.AbstractPlainSocketImpl.doConnect(unknown file)
java.net.AbstractPlainSocketImpl.connectToAddress(unknown file)
java.net.AbstractPlainSocketImpl.connect(unknown file)
java.net.SocksSocketImpl.connect(unknown file)
java.net.Socket.connect(unknown file)
org.apache.http.conn.scheme.PlainSocketFactory.connectSocket(PlainSocketFactory.java:117)
org.apache.http.impl.conn.DefaultClientConnectionOperator.openConnection(DefaultClientConnectionOperator.java:177)
org.apache.http.impl.conn.ManagedClientConnectionImpl.open(ManagedClientConnectionImpl.java:304)
org.apache.http.impl.client.DefaultRequestDirector.tryConnect(DefaultRequestDirector.java:610)
org.apache.http.impl.client.DefaultRequestDirector.execute(DefaultRequestDirector.java:445)
org.apache.http.impl.client.AbstractHttpClient.doExecute(AbstractHttpClient.java:863)
org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:82)
org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:57)
net.sf.taverna.t2.activities.rest.HTTPRequestHandler.performHTTPRequest(HTTPRequestHandler.java:290)
net.sf.taverna.t2.activities.rest.HTTPRequestHandler.doGET(HTTPRequestHandler.java:146)
net.sf.taverna.t2.activities.rest.HTTPRequestHandler.initiateHTTPRequest(HTTPRequestHandler.java:132)
net.sf.taverna.t2.activities.rest.RESTActivity$1.run(RESTActivity.java:264)
java.lang.Thread.run(unknown file)


Summary_Output help (application/x-error)

This output is an error, details are below.

Processor 'Read_Text_File' - Port 'filecontents'
Set of ErrorDocuments to follow.
ErrorDocument 1
Processor 'GetFileurl' - Port 'fileurl'
Set of ErrorDocuments to follow.
ErrorDocument 1
Processor 'trimID' - Port 'prID'
Set of ErrorDocuments to follow.
ErrorDocument 1
Processor 'submit_singlerun' - Port 'responseBody': Internal error has occurred while trying to execute the REST activity
java.net.ConnectException: Connection refused
java.net.PlainSocketImpl.socketConnect(unknown file)
java.net.AbstractPlainSocketImpl.doConnect(unknown file)
java.net.AbstractPlainSocketImpl.connectToAddress(unknown file)
java.net.AbstractPlainSocketImpl.connect(unknown file)
java.net.SocksSocketImpl.connect(unknown file)
java.net.Socket.connect(unknown file)
org.apache.http.conn.scheme.PlainSocketFactory.connectSocket(PlainSocketFactory.java:117)
org.apache.http.impl.conn.DefaultClientConnectionOperator.openConnection(DefaultClientConnectionOperator.java:177)
org.apache.http.impl.conn.ManagedClientConnectionImpl.open(ManagedClientConnectionImpl.java:304)
org.apache.http.impl.client.DefaultRequestDirector.tryConnect(DefaultRequestDirector.java:610)
org.apache.http.impl.client.DefaultRequestDirector.execute(DefaultRequestDirector.java:445)
org.apache.http.impl.client.AbstractHttpClient.doExecute(AbstractHttpClient.java:863)
org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:82)
org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:57)
net.sf.taverna.t2.activities.rest.HTTPRequestHandler.performHTTPRequest(HTTPRequestHandler.java:290)
net.sf.taverna.t2.activities.rest.HTTPRequestHandler.doGET(HTTPRequestHandler.java:146)
net.sf.taverna.t2.activities.rest.HTTPRequestHandler.initiateHTTPRequest(HTTPRequestHandler.java:132)
net.sf.taverna.t2.activities.rest.RESTActivity$1.run(RESTActivity.java:264)
java.lang.Thread.run(unknown file)


ErrorDocument 2
Processor 'check_status' - Port 'responseBody'
Set of ErrorDocuments to follow.
ErrorDocument 1
Processor 'trimID' - Port 'prID'
Set of ErrorDocuments to follow.
ErrorDocument 1
Processor 'submit_singlerun' - Port 'responseBody': Internal error has occurred while trying to execute the REST activity
java.net.ConnectException: Connection refused
java.net.PlainSocketImpl.socketConnect(unknown file)
java.net.AbstractPlainSocketImpl.doConnect(unknown file)
java.net.AbstractPlainSocketImpl.connectToAddress(unknown file)
java.net.AbstractPlainSocketImpl.connect(unknown file)
java.net.SocksSocketImpl.connect(unknown file)
java.net.Socket.connect(unknown file)
org.apache.http.conn.scheme.PlainSocketFactory.connectSocket(PlainSocketFactory.java:117)
org.apache.http.impl.conn.DefaultClientConnectionOperator.openConnection(DefaultClientConnectionOperator.java:177)
org.apache.http.impl.conn.ManagedClientConnectionImpl.open(ManagedClientConnectionImpl.java:304)
org.apache.http.impl.client.DefaultRequestDirector.tryConnect(DefaultRequestDirector.java:610)
org.apache.http.impl.client.DefaultRequestDirector.execute(DefaultRequestDirector.java:445)
org.apache.http.impl.client.AbstractHttpClient.doExecute(AbstractHttpClient.java:863)
org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:82)
org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:57)
net.sf.taverna.t2.activities.rest.HTTPRequestHandler.performHTTPRequest(HTTPRequestHandler.java:290)
net.sf.taverna.t2.activities.rest.HTTPRequestHandler.doGET(HTTPRequestHandler.java:146)
net.sf.taverna.t2.activities.rest.HTTPRequestHandler.initiateHTTPRequest(HTTPRequestHandler.java:132)
net.sf.taverna.t2.activities.rest.RESTActivity$1.run(RESTActivity.java:264)
java.lang.Thread.run(unknown file)




Errors/Logs (0)

None

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BioVeL has received funding from the European Union's Seventh Framework Programme for research, technological development and demonstration under grant agreement no. 283359.

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