14-200x200

RDA demonstration 1: Modelling suitable habitat for one mosquito species (Aedes cantans) under 2012 and 2050 climate scenario


Name:

Workflow: Ecological niche modelling workflow

Category: Ecological Niche Modelling

Status: Finished

Created at: 31 Aug 2015 17:38:46 UTC

Started at: 31 Aug 2015 17:38:46 UTC

Finished at: 31 Aug 2015 17:51:08 UTC

Outputs

Results (18)

answer help (text/plain)

no

area_statistics help ((list of depth 1))

  1. (text/plain)

    <AreaStatistics xmlns="http://openmodeller.cria.org.br/xml/2.0" CellsPredicted="490" PredictionThreshold="0.5" TotalCells="2849" />

  2. (text/plain)

    <AreaStatistics xmlns="http://openmodeller.cria.org.br/xml/2.0" CellsPredicted="434" PredictionThreshold="0.5" TotalCells="2816" />

create_final_model_log help (text/plain)

[Warn] Presence Point "16" at (12.817418,55.384037) has no environment. It will be discarded.
[Warn] Presence Point "84" at (16.433231,56.228535) has no environment. It will be discarded.
[Info] Creating model
[Info] Maxent: Generating random background points.
[Warn] Maxent: Threshold feature generator deactivated due to low number of presence points.
[Warn] Maxent: Product features deactivated due to low number of presence points.
[Info] Maxent: Gain         0.2964354294558262 
[Info] Maxent: Entropy         6.68 
[Info] Finished creating model  
[Info] Calculating ROC curve
[Info] Generating 10000 background points

external_auc_list help

    external_omission_list

      internal_test_model_log help (text/plain)

      [Warn] Presence Point "16" at (12.817418,55.384037) has no environment. It will be discarded.
      [Warn] Presence Point "84" at (16.433231,56.228535) has no environment. It will be discarded.
      [Info] Calculating ROC curve
      [Info] Generating 10000 background points
      [Warn] No absence points - commission error won't be calculated
      [Info] 
      Model statistics
      [Info] Accuracy:            46.27%
      [Info] Omission error:      53.73% (36/67)
      [Info] AUC:                  0.72
      
      

      internal_test_model_statistics help (text/plain)

      <Statistics xmlns="http://openmodeller.cria.org.br/xml/2.0">
      <ConfusionMatrix Accuracy="46.26865671641790811463579" CommissionError="-100" FalseNegatives="0" FalsePositives="36" OmissionError="53.73134328358209188536421" Threshold="0.5" TrueNegatives="0" TruePositives="31" />
      <RocCurve Auc="0.7243716417910447402661589" NumBackgroundPoints="10000" Points="0 0 0 0 0 0 0.001100000000000000066266437 0.04477611940298507203772616 0.007100000000000000408006962 0.1044776119402985037343257 0.02160000000000000114352972 0.2089552238805970074686513 0.04889999999999999902300374 0.2985074626865671376663158 0.09740000000000000046629367 0.4328358208955223607183882 0.1612999999999999989341859 0.4626865671641791077917105 0.3095999999999999863220523 0.6567164179104477694792763 0.5067000000000000392574862 0.7761194029850746467502631 0.7112000000000000543565193 0.8656716417910447214367764 0.8608000000000000095923269 0.9850746268656715987077632 0.9193000000000000060396133 0.9850746268656715987077632 0.9852999999999999536370865 1 1 1" /></Statistics>

      mean_auc help (text/plain)

      0.0

      mean_omission (text/plain)

      0.0

      project_model_output_log help ((list of depth 1))

      1. (text/plain)

        [Info] Running serial projection version
        [Info] Projecting model
        [Info] Finished projecting model
        
        

      2. (text/plain)

        [Info] Running serial projection version
        [Info] Projecting model
        [Info] Finished projecting model
        
        

      serialized_final_model help (text/plain)

      <SerializedModel xmlns="http://openmodeller.cria.org.br/xml/2.0">
      <Sampler>
      <Environment NumLayers="5">
      <Map Id="/layers/en/terrestrial/climate/global/worldclim/present/bioclim/10arc-minutes/3ed05d92-04da-11e1-be50-0800200c9a66" IsCategorical="0" Max="2095" Min="0" />
      <Map Id="/layers/en/terrestrial/climate/global/worldclim/present/bioclim/10arc-minutes/3ed05d93-04da-11e1-be50-0800200c9a66" IsCategorical="0" Max="652" Min="0" />
      <Map Id="/layers/en/terrestrial/climate/global/worldclim/present/bioclim/10arc-minutes/e4b161b0-04d9-11e1-be50-0800200c9a66" IsCategorical="0" Max="489" Min="-59" />
      <Map Id="/layers/en/terrestrial/climate/global/worldclim/present/bioclim/10arc-minutes/f6e850a0-04d9-11e1-be50-0800200c9a66" IsCategorical="0" Max="258" Min="-547" />
      <Map Id="wcs&gt;http://biostif.at.biovel.eu/geoserver/ows?&gt;biovel_temp:corine_land_cover_original__r300m_code_23" IsCategorical="0" />
      <Mask Id="/layers/en/masks/country/sweden/10arc-minutes/0513ec80-717d-11e4-82f8-0800200c9a66" /></Environment>
      <Presence Count="67" Label="cantans">
      <CoordinateSystem>GEOGCS["WGS84", DATUM["WGS84", SPHEROID["WGS84", 6378137.0, 298.257223563]], PRIMEM["Greenwich", 0.0], UNIT["degree", 0.017453292519943295], AXIS["Longitude",EAST], AXIS["Latitude",NORTH]]</CoordinateSystem>
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      <Point Id="11" Sample="93 47 201 -54 8620" X="12.5177281" Y="57.2206839" />
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      <Point Id="202" Sample="65 28 198 -167 0" X="22.4307076" Y="65.9256901" />
      <Point Id="17" Sample="79 36 202 -41 0" X="12.8370722" Y="56.2558184" />
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      <Point Id="20" Sample="68 34 204 -28 0" X="12.980028" Y="55.7612066" />
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      <Point Id="133" Sample="90 29 161 -167 2068" X="18.0720534" Y="66.8889968" />
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      <Point Id="166" Sample="74 34 197 -163 0" X="19.7107968" Y="64.1881558" />
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      <Point Id="180" Sample="77 23 172 -196 0" X="20.4675028" Y="67.1708117" /></Presence></Sampler>
      <Algorithm Id="MAXENT" Version="1.0">
      <Parameters>
      <Parameter Id="AutoFeatures" Value="1" />
      <Parameter Id="HingeFeatures" Value="1" />
      <Parameter Id="IncludePresencePointsInBackground" Value="1" />
      <Parameter Id="MinSamplesForHinge" Value="15" />
      <Parameter Id="MinSamplesForProductThreshold" Value="80" />
      <Parameter Id="MinSamplesForQuadratic" Value="10" />
      <Parameter Id="NumberOfBackgroundPoints" Value="1000" />
      <Parameter Id="NumberOfIterations" Value="500" />
      <Parameter Id="OutputFormat" Value="2" />
      <Parameter Id="ProductFeatures" Value="1" />
      <Parameter Id="QuadraticFeatures" Value="1" />
      <Parameter Id="TerminateTolerance" Value="0.00001" />
      <Parameter Id="ThresholdFeatures" Value="1" />
      <Parameter Id="UseAbsencesAsBackground" Value="0" /></Parameters>
      <Model>
      <MaximumEntropy Entropy="6.676298870951186792410681" LN="4.621408678164878658378711" OutputFormat="2" Z="100.2884700343113451026511">
      <Features Num="37">
      <Feature Lambda="-0.1820032263369531499996867" Max="118" Min="51" Ref="0" Type="0" />
      <Feature Lambda="-0.1274528904138842733129167" Max="61" Min="21" Ref="1" Type="0" />
      <Feature Lambda="2.364478895407179592780267" Max="224" Min="115" Ref="2" Type="0" />
      <Feature Lambda="1.434728606476476597819669" Max="-21" Min="-212" Ref="3" Type="0" />
      <Feature Lambda="0.8891875573253286146879759" Max="10000" Min="0" Ref="4" Type="0" />
      <Feature Lambda="0" Max="13924" Min="2601" Ref="0" Type="1" />
      <Feature Lambda="0" Max="3721" Min="441" Ref="1" Type="1" />
      <Feature Lambda="0" Max="50176" Min="13225" Ref="2" Type="1" />
      <Feature Lambda="0" Max="44944" Min="441" Ref="3" Type="1" />
      <Feature Lambda="0" Max="100000000" Min="0" Ref="4" Type="1" />
      <Feature Lambda="0" Max="-21" Min="-117.5" Ref="3" Reverse="0" Type="3" />
      <Feature Lambda="0" Max="-51" Min="-63.5" Ref="0" Reverse="1" Type="3" />
      <Feature Lambda="0" Max="-21" Min="-118.5" Ref="3" Reverse="0" Type="3" />
      <Feature Lambda="-0.6535452704462193507239931" Max="-0" Min="-172" Ref="4" Reverse="1" Type="3" />
      <Feature Lambda="0" Max="-21" Min="-119.5" Ref="3" Reverse="0" Type="3" />
      <Feature Lambda="0" Max="-115" Min="-202.5" Ref="2" Reverse="1" Type="3" />
      <Feature Lambda="0" Max="-51" Min="-64.5" Ref="0" Reverse="1" Type="3" />
      <Feature Lambda="0" Max="-0" Min="-516.5" Ref="4" Reverse="1" Type="3" />
      <Feature Lambda="-0.5337490658836182566560069" Max="224" Min="212.5" Ref="2" Reverse="0" Type="3" />
      <Feature Lambda="0" Max="-115" Min="-203.5" Ref="2" Reverse="1" Type="3" />
      <Feature Lambda="0.2768360572197952618189731" Max="-21" Min="-36.5" Ref="1" Reverse="1" Type="3" />
      <Feature Lambda="-0.6138893283803050771041399" Max="212" Min="166.5" Ref="3" Reverse="1" Type="3" />
      <Feature Lambda="0.1640561845401421470214132" Max="-21" Min="-26.5" Ref="3" Reverse="0" Type="3" />
      <Feature Lambda="0" Max="-21" Min="-32.5" Ref="3" Reverse="0" Type="3" />
      <Feature Lambda="-1.091434609290907076228905" Max="-21" Min="-23.5" Ref="1" Reverse="1" Type="3" />
      <Feature Lambda="1.50395017380548412511132" Max="-21" Min="-35.5" Ref="1" Reverse="1" Type="3" />
      <Feature Lambda="0" Max="-115" Min="-208.5" Ref="2" Reverse="1" Type="3" />
      <Feature Lambda="0" Max="224" Min="190.5" Ref="2" Reverse="0" Type="3" />
      <Feature Lambda="-2.23396393511914004292862" Max="224" Min="210.5" Ref="2" Reverse="0" Type="3" />
      <Feature Lambda="0" Max="-21" Min="-22.5" Ref="1" Reverse="1" Type="3" />
      <Feature Lambda="0.3103776460074515464171441" Max="212" Min="191.5" Ref="3" Reverse="1" Type="3" />
      <Feature Lambda="0.22451227134329226897691" Max="-21" Min="-34.5" Ref="3" Reverse="0" Type="3" />
      <Feature Lambda="0" Max="-51" Min="-59.5" Ref="0" Reverse="1" Type="3" />
      <Feature Lambda="-0.0964435920677984004356631" Max="-21" Min="-27.5" Ref="1" Reverse="1" Type="3" />
      <Feature Lambda="0.645407509199586670867177" Max="-51" Min="-60.5" Ref="0" Reverse="1" Type="3" />
      <Feature Lambda="0.0389763573866263660083753" Max="-21" Min="-25.5" Ref="3" Reverse="0" Type="3" />
      <Feature Lambda="0.2964955945911461054897984" Max="-21" Min="-33.5" Ref="3" Reverse="0" Type="3" /></Features></MaximumEntropy></Model></Algorithm>
      <Statistics>
      <ConfusionMatrix Accuracy="46.26865671641790811463579" CommissionError="-100" FalseNegatives="0" FalsePositives="36" OmissionError="53.73134328358209188536421" Threshold="0.5" TrueNegatives="0" TruePositives="31" />
      <RocCurve Auc="0.7230194029850746106902193" NumBackgroundPoints="10000" Points="0 0 0 0 0.0002999999999999999737189393 0 0.001799999999999999950733853 0.04477611940298507203772616 0.006599999999999999963917752 0.1044776119402985037343257 0.02220000000000000098254738 0.2089552238805970074686513 0.05079999999999999793498517 0.2985074626865671376663158 0.09769999999999999518163207 0.4328358208955223607183882 0.1653000000000000024868996 0.4626865671641791077917105 0.3133000000000000229150032 0.6567164179104477694792763 0.5052999999999999714006549 0.7761194029850746467502631 0.7129999999999999671373985 0.8656716417910447214367764 0.8606000000000000316191517 0.9850746268656715987077632 0.9216999999999999637623205 0.9850746268656715987077632 0.9825000000000000399680289 1 1 1" /></Statistics></SerializedModel>

      xval_create_model_log help

        xval_test_model_log help

          xval_test_model_statistics help

            xval_threshold

              Errors/Logs (0)

              None

              Inputs

              Data (2)

              input_points help

              occurrenceID,nameComplete,decimalLongitude,decimalLatitude
              4,cantans,11.7215691,58.4583951
              5,cantans,12.1953443,63.3180804
              7,cantans,12.3280315,57.8935232
              205,cantans,23.1165215,67.816594
              11,cantans,12.5177281,57.2206839
              13,cantans,12.6096256,57.1483093
              202,cantans,22.4307076,65.9256901
              16,cantans,12.8174177,55.3840371
              17,cantans,12.8370722,56.2558184
              195,cantans,21.6530906,65.5904776
              20,cantans,12.980028,55.7612066
              194,cantans,21.56053,65.8338719
              29,cantans,13.4734597,59.3219267
              32,cantans,13.497855,59.3523635
              34,cantans,13.5077118,57.2913169
              40,cantans,13.9494604,56.4171473
              41,cantans,13.9846361,61.5099805
              42,cantans,14.0158075,59.9700733
              52,cantans,14.1903132,55.882462
              53,cantans,14.1912255,55.3833531
              54,cantans,14.2057322,57.022291
              63,cantans,14.9121059,65.0583918
              70,cantans,15.4374215,65.7523533
              72,cantans,15.4471072,63.4891864
              73,cantans,15.4975464,62.7649402
              75,cantans,15.6765649,58.1469091
              76,cantans,15.7586541,56.3447995
              77,cantans,15.9890627,57.6826529
              78,cantans,16.0662604,57.5942098
              79,cantans,16.0766692,60.3022376
              80,cantans,16.2356567,60.1482852
              81,cantans,16.2379508,59.2782745
              82,cantans,16.4053431,64.2595086
              83,cantans,16.4076222,58.1965191
              84,cantans,16.433231,56.2285345
              193,cantans,21.4946041,65.4148895
              89,cantans,16.6135435,56.6068305
              93,cantans,16.6943914,63.7983734
              96,cantans,16.7564377,60.874165
              98,cantans,16.8165649,60.6203802
              100,cantans,16.8247873,61.0979061
              103,cantans,17.0808264,57.3184395
              104,cantans,17.0865861,57.3136664
              108,cantans,17.2773835,60.132141
              109,cantans,17.2908629,65.6834676
              110,cantans,17.3270381,59.8260402
              112,cantans,17.3736189,60.6376702
              114,cantans,17.4024295,60.2778544
              115,cantans,17.4044022,60.470008
              122,cantans,17.7148965,59.9805921
              123,cantans,17.7189383,60.0611659
              127,cantans,17.7666068,60.4211032
              130,cantans,17.8526921,60.1725956
              132,cantans,18.0460861,59.9620981
              133,cantans,18.0720534,66.8889968
              137,cantans,18.2187913,65.9928908
              191,cantans,21.1153362,67.4127141
              139,cantans,18.2276308,56.9373643
              140,cantans,18.2603771,57.3248379
              152,cantans,18.4799567,57.2442166
              155,cantans,18.6684764,59.3505212
              159,cantans,18.7001171,59.7902624
              165,cantans,19.694636,64.3468494
              166,cantans,19.7107968,64.1881558
              171,cantans,19.9308605,68.0184195
              172,cantans,19.9416543,66.1745981
              185,cantans,20.8186725,64.1454326
              174,cantans,19.9561546,64.1010152
              180,cantans,20.4675028,67.1708117
              

              use_biostif_layers help

              yes

              Parameters (0)

              None

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