Microbial Metagenomic Trait Statistical Analysis Workflow

HelpDocumentation Myexp_iconView on myExperiment

This workflow retrieves the following microbial metagenomic traits from the Microbial Metagenomic Trait Database:

-GC content
-Variance of GC content
-Number of rRNA
-Codon usage
-Amino acid composition
-Acidic to basic amino acids ratio
-% of Transcriptional factors
-% of classified reads
-Functional content
-Functional diversity
-Taxonomic content
-Taxonomic diversity

After the retrieval performs the ecological analyses described in Barberan et al. 2012 (http://dx.doi.org/10.1111/j.1365-294X.2011.05383.x)

Please read: https://wiki.biovel.eu/display/doc/Metagenomic+Workflows

Inputs (1)
Outputs (19)
Interactions (0)
R Scripts (4)

Related runs

BioVeL has received funding from the European Union's Seventh Framework Programme for research, technological development and demonstration under grant agreement no. 283359.

Portal version: 1.6.1-61c993b