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Taverna_logo Bioclim workflow
Ecological Niche Modelling

BioVeL avatar

This workflow takes as input a file containing species occurrence points to create a model with the openModeller Web Service using the Bioclim algorithm. Environmental layers and mask are selected during the workflow. Points are filtered so that only environmentally unique points are used to create
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Uploaded 25 Mar 2014 14:34:43 UTC

Taverna_logo BioVeL ESW DIFF - ENM Statistical Workflow with raster difference computation
Ecological Niche Modelling

BioVeL avatar

The ENM Statistical Difference Workflow (ESW DIFF) allows the computation of the extent and intensity of change in species potential distribution through computation of the differences between two raster layers using the R statistical environment (R Core Team 2013). The difference file is computed
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Uploaded 25 Mar 2014 14:27:29 UTC

Taverna_logo BioVeL ESW STACK - ENM Statistical Workflow with raster stack computation
Ecological Niche Modelling

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The ENM Statistical Stack Workflow (ESW STACK) allows the computation of the extent, intensity and a cummulated potential species distribution through computation of an average sum layer from the input raster layers using the R statistical environment (R Core Team 2013). The sum layer is computed
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Uploaded 5 Feb 2014 10:41:59 UTC

Taverna_logo Data Refinement Workflow v17
Taxonomic Refinement

BioVeL avatar

The aim of the (Taxonomic) Data Refinement Workflow is to provide a streamlined workflow environment for preparing observational and specimen data sets for use in scientific analysis on the Taverna platform. The workflow has been designed in a way that,
• accepts input data in a recognized format,
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Uploaded 2 Sep 2014 09:08:26 UTC

Taverna_logo Ecological niche modelling workflow
Ecological Niche Modelling

BioVeL avatar

This workflow takes as input a file containing species occurrence points to create a model with the openModeller Web Service. Algorithm, environmental layers and mask are selected during the workflow. The model is tested (internal test and optional cross validation external test) and then projected
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Uploaded 25 Mar 2014 08:23:17 UTC

Taverna_logo Microbial Metagenomic Trait Statistical Analysis Workflow
Metagenomics

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This workflow retrieves the following microbial metagenomic traits from the Microbial Metagenomic Trait Database:

-GC content
-Variance of GC content
-Dinucleotides
-Number of rRNA
-Codon usage
-Amino acid composition
-Acidic to basic amino acids ratio
-% of Transcriptional factors
-% of classified
...

Uploaded 5 Dec 2014 11:46:58 UTC
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BioVeL has received funding from the European Union's Seventh Framework Programme for research, technological development and demonstration under grant agreement no. 283359.

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